Merge branch 'dt/submodule-diff-fixes'

"git diff --submodule=diff" showed failure from run_command() when
trying to run diff inside a submodule, when the user manually
removes the submodule directory.

* dt/submodule-diff-fixes:
  diff --submodule=diff: don't print failure message twice
  diff --submodule=diff: do not fail on ever-initialied deleted submodules
  t4060: remove unused variable

diff --cc submodule.c
Simple merge