Lib-ify prune-packed

Lib-ify prune-packed

In builtin.h, there exists the distinctly lib-ish function
prune_packed_objects(). This function can currently only be called by
built-in commands but, unlike all of the other functions in the header,
it does not make sense to impose this restriction as the functionality
can be logically reused in libgit.

Extract this function into prune-packed.c so that related definitions
can exist clearly in their own header file.

While we're at it, clean up #includes that are unused.

This patch is best viewed with --color-moved.

Signed-off-by: Denton Liu <liu.denton@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>