diff.c: remove implicit dependency on the_index

diff.c: remove implicit dependency on the_index

A new variant repo_diff_setup() is added that takes 'struct repository *'
and diff_setup() becomes a thin macro around it that is protected by
NO_THE_REPOSITORY_COMPATIBILITY_MACROS, similar to NO_THE_INDEX_....
The plan is these macros will always be defined for all library files
and the macros are only accessible in builtin/

Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>