python3-setuptools: upgrade 59.5.0 -> 62.3.1

python3-setuptools: upgrade 59.5.0 -> 62.3.1

This was held by numpy rejecting setuptools >= 60.x,
however it got a workaround in recent point releases
and so the upgrade can proceed.

Drop 0001-_distutils-sysconfig-append-STAGING_LIBDIR-python-sy.patch
as changed code completely removed upstream.

Replicate another distutils/sysconfig.py fix from python recipe via
0001-_distutils-sysconfig.py-make-it-possible-to-substite.patch

Add a tomli build dependency to python3-setuptools-scm as new
setuptools exposes:

|   File "/srv/work/alex/poky/build-64-alt/tmp/work/x86_64-linux/python3-setuptools-scm-native/6.4.2-r0/setuptools_scm-6.4.2/src/setuptools_scm/config.py", line 59, in _lazy_tomli_load
|     from tomli import loads
| ModuleNotFoundError: No module named 'tomli'

Signed-off-by: Alexander Kanavin <alex@linutronix.de>
Signed-off-by: Luca Ceresoli <luca.ceresoli@bootlin.com>
Signed-off-by: Richard Purdie <richard.purdie@linuxfoundation.org>