fstrim --all is broken in a way that if there is a bind mount for some filesystem,
that filesystem will not be trimmed. This is especially critical for e.g.
NixOS distribution, which needs bind mount within root fs:
https://github.com/NixOS/nixos/blob/master/modules/system/boot/stage-2-init.sh#L55
Currently for a given filesystem during "de-duplication by source and root" phase,
an early mounted fs path is filtered (e.g. "/"), while later mounted fs path is kept
(e.g. "/nix/store") though anyway discarded later (since it's an overlaying mount).
This leads to skipped trimming.
So flip this behaviour. Should also help for other types of overlaying mounts.