Close object store closer to spawning child processes

Close object store closer to spawning child processes

In many cases where we spawned child processes that _may_ trigger a
repack, we explicitly closed the object store first (so that the
`repack` process can delete the `.pack` files, which would otherwise not
be possible on Windows since files cannot be deleted as long as they as
still in use).

Wherever possible, we now use the new `close_object_store` bit of the
`run_command()` API, to delay closing the object store even further.
This makes the code easier to maintain because it is now more obvious
that we only release those file handles because of those child
processes.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>