packfile: pass down repository to `has_object[_kept]_pack`

packfile: pass down repository to `has_object[_kept]_pack`

The functions `has_object[_kept]_pack` currently rely on the global
variable `the_repository`. To eliminate global variable usage in
`packfile.c`, we should progressively shift the dependency on
the_repository to higher layers. Let's remove its usage from these
functions and any related ones.

Signed-off-by: Karthik Nayak <karthik.188@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>